Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THCA | rs61286322 | chr11:45047763 | C/T | 3.28E-5 | 482 | 14.93 | 19.23 | 12.1 | KM Plot |
THCA | rs61358910 | chr1:219528482 | C/A | 3.79E-7 | 484 | 15.9 | 16.93 | 7.93 | KM Plot |
THCA | rs61477737 | chr1:184125481 | A/G | 6.0E-15 | 482 | 15.23 | 18.23 | 15.15 | KM Plot |
THCA | rs61540463 | chr1:45985987 | AGG/A | 7.06E-5 | 486 | 10.8 | 16.18 | 16.87 | KM Plot |
THCA | rs61546108 | chr1:156886777 | G/A | 8.08E-7 | 473 | 16.48 | 14.87 | 11.3 | KM Plot |
THCA | rs616180 | chr1:4645704 | T/G | 0.00029 | 486 | 11.28 | 14.9 | 16.23 | KM Plot |
THCA | rs61621981 | chr7:29822551 | G/A | 4.22E-5 | 487 | 16.02 | 15.17 | 12.83 | KM Plot |
THCA | rs61731032 | chr4:39463903 | C/A | 4.44E-15 | 489 | 15.9 | 17.38 | 6.1 | KM Plot |
THCA | rs617549 | chr18:32716493 | C/T | 4.23E-6 | 489 | 15.8 | 16.3 | 14.17 | KM Plot |
THCA | rs617633 | chr4:1077880 | G/A | 2.64E-5 | 485 | 16.07 | 15.57 | 9.85 | KM Plot |
THCA | rs61774689 | chr1:41685422 | C/T | 2.8E-7 | 490 | 14.92 | 17.77 | 17.47 | KM Plot |
THCA | rs61774708 | chr1:41714807 | A/G | 2.02E-7 | 489 | 14.93 | 17.72 | 17.47 | KM Plot |
THCA | rs61774710 | chr1:41719115 | A/G | 1.97E-7 | 489 | 14.93 | 17.75 | 17.47 | KM Plot |
THCA | rs61774713 | chr1:41722396 | G/A | 1.94E-7 | 490 | 14.93 | 17.75 | 17.47 | KM Plot |
THCA | rs61774715 | chr1:41727027 | C/T | 2.35E-7 | 488 | 14.93 | 17.75 | 17.47 | KM Plot |